PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G12950.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 149aa    MW: 16459.4 Da    PI: 7.4226
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G12950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_145.81.4e-142989363
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                     + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N + + +   +  ++a++++e+
  LPERR12G12950.1 29 DNRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARTADIAGQYARVEQEN 89
                     568*****************************************99999999999999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-112274No hitNo description
SMARTSM003382.4E-162791IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.1282992IPR004827Basic-leucine zipper domain
PfamPF001704.7E-113089IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.31E-103180No hitNo description
CDDcd147023.67E-153283No hitNo description
PROSITE patternPS0003603449IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSTSSLSPAG SSDGGLSPSP SPSSPAAADN RREKRRLSNR ESARRSRLRK QQHLDELVQE  60
VARLQADNAR VAARTADIAG QYARVEQENT VLRARAAELG DRLRSVNEVL RVVEEFSGVA  120
MDIQEECPVD DPLLRPWQIP CPAAHMLQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349RRSRLRK
24350RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1852801e-154AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds.
GenBankAL9350721e-154AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149681e-154AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126201e-154CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962768.16e-77PREDICTED: ocs element-binding factor 1
RefseqXP_015619873.15e-77PREDICTED: ocs element-binding factor 1
SwissprotP240683e-76OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLA0A0D9Y0C81e-104A0A0D9Y0C8_9ORYZ; Uncharacterized protein
STRINGBGIOSGA037592-PA1e-76(Oryza sativa Indica Group)
STRINGLOC_Os12g37410.11e-76(Oryza sativa Japonica Group)
STRINGLOC_Os12g37415.11e-76(Oryza sativa Japonica Group)
STRINGORGLA11G0215100.11e-76(Oryza glaberrima)
STRINGORGLA12G0138000.11e-76(Oryza glaberrima)
STRINGSi023541m2e-76(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.11e-35basic region/leucine zipper motif 53